Dataset Identification:
Resource Abstract:
- description: <p>BBGD (<a href="http://bioinformatics.towson.edu/BBGD/">http://bioinformatics.towson.edu/BBGD/</a>)
was developed as a database for blueberry genomics. BBGD is both a sequence and gene expression database. It stores both EST
and microarray data and allows scientists to correlate expression profiles with gene function. BBGD is a public online database.
"Presently, the main focus of the database is the identification of genes in blueberry that are significantly induced
or suppressed after low temperature exposure. "</p> <p>To gain a better understanding of changes in gene
expression associated with cold acclimation in blueberry, the Rowland laboratory (USDA-ARS, Beltsville, MD) has undertaken
a genomics approach based on the analysis of Expressed Sequence Tags (ESTs). Initially, two standard cDNA libraries were constructed
using RNA from cold-acclimated and non-acclimated floral buds of the blueberry cultivar Bluecrop (<em>Vaccinium corymbosum</em>
L.) and about 1200 5-end ESTs were generated from each of the libraries. About 100 3-end ESTs were generated from the cold-acclimated
library as well.</p> <p>The Blueberry EST database contains EST sequences from a number blueberry libraries including
cold acclimated and non-acclimated libraries. It also includes forward and reverse subtractive libraries.</p> <p>You
can query the sequence database by clone ID, accession number or gene (clone) name below. Or you can get a list (in tabular)
format of all the clones in a particular library by clicking on the library name on the left side navigation bar.</p>
<p>Attribution for photo: <a href="http://www.ars.usda.gov/is/graphics/photos/sep12/d2601-1.htm">D2601-1
- Blueberry plant:</a> Copyright free, public domain photo by Mark Ehlenfeldt</p>; abstract: <p>BBGD (<a
href="http://bioinformatics.towson.edu/BBGD/">http://bioinformatics.towson.edu/BBGD/</a>) was developed
as a database for blueberry genomics. BBGD is both a sequence and gene expression database. It stores both EST and microarray
data and allows scientists to correlate expression profiles with gene function. BBGD is a public online database. "Presently,
the main focus of the database is the identification of genes in blueberry that are significantly induced or suppressed after
low temperature exposure. "</p> <p>To gain a better understanding of changes in gene expression associated
with cold acclimation in blueberry, the Rowland laboratory (USDA-ARS, Beltsville, MD) has undertaken a genomics approach based
on the analysis of Expressed Sequence Tags (ESTs). Initially, two standard cDNA libraries were constructed using RNA from
cold-acclimated and non-acclimated floral buds of the blueberry cultivar Bluecrop (<em>Vaccinium corymbosum</em>
L.) and about 1200 5-end ESTs were generated from each of the libraries. About 100 3-end ESTs were generated from the cold-acclimated
library as well.</p> <p>The Blueberry EST database contains EST sequences from a number blueberry libraries including
cold acclimated and non-acclimated libraries. It also includes forward and reverse subtractive libraries.</p> <p>You
can query the sequence database by clone ID, accession number or gene (clone) name below. Or you can get a list (in tabular)
format of all the clones in a particular library by clicking on the library name on the left side navigation bar.</p>
<p>Attribution for photo: <a href="http://www.ars.usda.gov/is/graphics/photos/sep12/d2601-1.htm">D2601-1
- Blueberry plant:</a> Copyright free, public domain photo by Mark Ehlenfeldt</p>
Citation
- Title BBGD: an Online Database for Blueberry Genomic Data.
-
- creation Date
2018-02-04T00:03:11.160546
Resource language:
Processing environment:
Back to top:
Digital Transfer Options
-
- Linkage for online resource
-
- name Dublin Core references URL
- URL: http://bioinformatics.towson.edu/BBGD/
- protocol WWW:LINK-1.0-http--link
- link function information
- Description URL provided in Dublin Core references element.
Metadata data stamp:
2018-08-07T00:06:52Z
Resource Maintenance Information
- maintenance or update frequency:
- notes: This metadata record was generated by an xslt transformation from a dc metadata record; Transform by Stephen M. Richard, based
on a transform by Damian Ulbricht. Run on 2018-08-07T00:06:52Z
Metadata contact
-
pointOfContact
- organisation Name
CINERGI Metadata catalog
-
- Contact information
-
-
- Address
-
- electronic Mail Address cinergi@sdsc.edu
Metadata language
eng
Metadata character set encoding:
utf8
Metadata standard for this record:
ISO 19139 Geographic Information - Metadata - Implementation Specification
standard version:
2007
Metadata record identifier:
urn:dciso:metadataabout:a1753d79-a5b1-4d26-a0aa-7e9002e2463a
Metadata record format is ISO19139 XML (MD_Metadata)