SoyBase and the Soybean Breeder's Toolbox.

Dataset Identification:

Resource Abstract:
description: <p>SoyBase is a repository for genetics, genomics and related data resources for soybean. It contains current genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits.</p> <p>SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include molecular data regarding soybean genes and sequences as they became available. In 2010, the soybean genome sequence was published and it and supporting gene sequences have been integrated into the SoyBase sequence browser. SoyBase genetic maps were used in the assembly of both the Williams 82 2010 assembly (Wm82.a1.v1) and the newest genome assembly (Wm82.a2.v1).</p> <p>SoyBase also incorporates information about mutant and other soybean genetic stocks and serves as a contact point for ordering strains from those populations. As association analyses continue due to various re-sequencing efforts SoyBase will also incorporate those data into the soybean genome browser as they become available. Gene expression patterns are also available at SoyBase through the SoyBase expression pages and the Soybean Gene Atlas. Other expression/transcriptome/methylomic data sets also have been and continue to be incorporated into the SoyBase genome browser.</p> <p>Project No:3625-21000-062-00D Accession No: 0425040</p>; abstract: <p>SoyBase is a repository for genetics, genomics and related data resources for soybean. It contains current genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits.</p> <p>SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include molecular data regarding soybean genes and sequences as they became available. In 2010, the soybean genome sequence was published and it and supporting gene sequences have been integrated into the SoyBase sequence browser. SoyBase genetic maps were used in the assembly of both the Williams 82 2010 assembly (Wm82.a1.v1) and the newest genome assembly (Wm82.a2.v1).</p> <p>SoyBase also incorporates information about mutant and other soybean genetic stocks and serves as a contact point for ordering strains from those populations. As association analyses continue due to various re-sequencing efforts SoyBase will also incorporate those data into the soybean genome browser as they become available. Gene expression patterns are also available at SoyBase through the SoyBase expression pages and the Soybean Gene Atlas. Other expression/transcriptome/methylomic data sets also have been and continue to be incorporated into the SoyBase genome browser.</p> <p>Project No:3625-21000-062-00D Accession No: 0425040</p>
Citation
Title SoyBase and the Soybean Breeder's Toolbox.
creation  Date   2018-03-29T23:11:07.651304
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Digital Transfer Options
Linkage for online resource
name Dublin Core references URL
URL: https://soybase.org
protocol WWW:LINK-1.0-http--link
link function information
Description URL provided in Dublin Core references element.

Metadata data stamp:  2018-08-06T23:27:19Z
Resource Maintenance Information
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notes: This metadata record was generated by an xslt transformation from a dc metadata record; Transform by Stephen M. Richard, based on a transform by Damian Ulbricht. Run on 2018-08-06T23:27:19Z
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organisation Name  CINERGI Metadata catalog
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electronic Mail Address cinergi@sdsc.edu
Metadata language  eng
Metadata character set encoding:   utf8
Metadata standard for this record:  ISO 19139 Geographic Information - Metadata - Implementation Specification
standard version:  2007
Metadata record identifier:  urn:dciso:metadataabout:32baa8d5-8d39-4644-ae8a-977a897e2939

Metadata record format is ISO19139 XML (MD_Metadata)